Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5654010_5654431_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5654010 - 5654431

Intron Length:

422

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTTCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTGAT

U12 Branch Point Sequence:

TGAAAATTGATT

Flanking Amino Acid:

MPHYRKEISRQVVHLSLAED

Intron Amino Acid Position:

345

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

76.2

39.9

Major BPS

79.8

0.74

0.9

69.4

37.7

Major PPT

91.4

0.93

0.6

85.5

29.2

Minor 5ss

-1.8

3.3

40.9

45.4

Minor BPS

46.8

-0.1

1.8

63.93

39.8

Associated Gene:

Gene:

STXBP3

Ensembl Gene ID:

ENSAPLG00000006737

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033738

5639836 - 5661646

21811

ENSAPLT00000007077

5638027 - 5661646

23620