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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5656903_5657813_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5656903 - 5657813
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
GGTTCTTTAAAA
Flanking Amino Acid:
WTPVIKDVMEDAIENKLDSK
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.3
37
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
85.2
0.79
0.7
82.1
29.9
Minor 5ss
40.6
-1.1
2.7
50.9
45.5
Minor BPS
70.9
0.65
1.3
74.47
36.5

Associated Gene:

Gene:
STXBP3
Ensembl Gene ID:
ENSAPLG00000006737
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033738
5639836 - 5661646
21811
ENSAPLT00000007077
5638027 - 5661646
23620