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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5664025_5664932_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
5664025 - 5664932
Intron Length:
908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
CTCCAATATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TGTCCTTTCACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
77.3
0.68
1
81.5
27
Major PPT
65.5
0.35
0.9
62.6
37.5
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
65
0.55
1.8
82.13
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013750
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014322
5663943 - 5673185
9243