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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5665408_5665493_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5665408 - 5665493
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TACTTTTTAAAC
Flanking Amino Acid:
SIQDYIKRKKDLYSDALEKA
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70.2
35.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
30.6
-2.2
3.1
38.6
46.4
Minor BPS
64.5
0.43
1.3
68.01
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013750
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014322
5663943 - 5673185
9243