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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5665614_5668862_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5665614 - 5668862
Intron Length:
3249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAGAT
5'SS Class:
major
3'SS Sequence:
TTGGGGATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AGGTCTTTAATA
Flanking Amino Acid:
LASKHSSSVMAVIQKTSQPV
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
67.8
37.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
63.8
0.31
1
59.3
46
Minor 5ss
30.8
-2.2
3.7
43
45.6
Minor BPS
70.9
0.65
1.2
70.2
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013750
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014322
5663943 - 5673185
9243