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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5668957_5669444_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5668957 - 5669444
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTAACCAATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAA
U12 Branch Point Sequence:
TTTTGCTTAACC
Flanking Amino Acid:
EAAKYNLCPHMLQKRAESTS
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.5
27.8
Major BPS
58.6
0.22
1.1
59.7
34.6
Major PPT
67.8
0.4
1
64.1
41.4
Minor 5ss
38.7
-1.3
3.4
53.7
43.8
Minor BPS
81
0.95
1.7
90.55
30.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013750
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014322
5663943 - 5673185
9243