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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_568005_572373_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
568005 - 572373
Intron Length:
4369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTTTTAAAA
Flanking Amino Acid:
VVVTHEGKPEDPSLPKSNVR
Intron Amino Acid Position:
711

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.3
0.48
1
67.6
41.7
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
66.3
0.51
1.5
75.65
35.9

Associated Gene:

Gene:
TGFBR3
Ensembl Gene ID:
ENSAPLG00000014247
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035945
555729 - 680318
124590
ENSAPLT00000014882
559197 - 680502
121306