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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5682210_5688454_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5682210 - 5688454
Intron Length:
6245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TTAAATTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTTAAAT
Flanking Amino Acid:
REDRSFHVRYRMEASCLELA
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
71.4
0.48
1.1
65.8
44.7
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
78.7
0.98
1.5
94.83
31.3

Associated Gene:

Gene:
GPSM2
Ensembl Gene ID:
ENSAPLG00000013579
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014192
5681897 - 5698920
17024