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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5688677_5689742_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5688677 - 5689742
Intron Length:
1066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTGG
5'SS Class:
major
3'SS Sequence:
GCTGCAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
TCTGCTGCAATT
Flanking Amino Acid:
EYHHHDLTLARTIGDLLGEA
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
62.5
44.6
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
64.5
0.33
1
59.7
40.7
Minor 5ss
43.3
-0.7
2.9
56.5
47.6
Minor BPS
46.1
-0.2
2.2
67.06
44.8

Associated Gene:

Gene:
GPSM2
Ensembl Gene ID:
ENSAPLG00000013579
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014192
5681897 - 5698920
17024