Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5691069_5691347_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5691069 - 5691347

Intron Length:

279

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGCAA

5'SS Class:

major

3'SS Sequence:

TCCCATTTTTAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTAAT

U12 Branch Point Sequence:

ATTAATGCAATT

Flanking Amino Acid:

FRSAVLAHEQRLLIAKEFGD

Intron Amino Acid Position:

230

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.8

0.44

1.1

58.8

41.7

Major BPS

0.82

0.8

24.9

Major PPT

70.8

0.47

74.4

33.8

Minor 5ss

29.1

-2.4

3.4

38.6

46.4

Minor BPS

42.7

-0.4

2.2

64.22

40.5

Associated Gene:

Gene:

GPSM2

Ensembl Gene ID:

ENSAPLG00000013579

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014192

5681897 - 5698920

17024