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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5692263_5693076_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5692263 - 5693076
Intron Length:
814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAGCAT
U12 Branch Point Sequence:
ACAGCCTTGAGC
Flanking Amino Acid:
HLVIAQELNDKIGEGRACWS
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.2
36.3
Major BPS
49.2
-0
1.5
59.7
46.7
Major PPT
88.7
0.87
0.6
84.5
23.3
Minor 5ss
38.6
-1.3
3
52.1
38.3
Minor BPS
49.8
-0
1.8
56.23
42.7

Associated Gene:

Gene:
GPSM2
Ensembl Gene ID:
ENSAPLG00000013579
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014192
5681897 - 5698920
17024