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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5693186_5693590_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5693186 - 5693590
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTGGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTCTTTACA
Flanking Amino Acid:
AERHLEISREVGDKSGELTA
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
37.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.2
0.68
0.9
73.4
41.3
Minor 5ss
44.4
-0.6
2.8
59.5
45.2
Minor BPS
71.8
0.68
1.5
80.05
35.9

Associated Gene:

Gene:
GPSM2
Ensembl Gene ID:
ENSAPLG00000013579
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014192
5681897 - 5698920
17024