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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5695806_5696590_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5695806 - 5696590
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTTCA
5'SS Class:
major
3'SS Sequence:
CTCTCCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
AGTACCTTTATT
Flanking Amino Acid:
IDHRLPNSQRRNSRETMADE
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
68.6
39.2
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
81.4
0.71
0.7
72.9
31.9
Minor 5ss
38.6
-1.3
3
41.3
45.2
Minor BPS
62
0.46
1.7
76.12
40

Associated Gene:

Gene:
GPSM2
Ensembl Gene ID:
ENSAPLG00000013579
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014192
5681897 - 5698920
17024