Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5700296_5700855_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5700296 - 5700855

Intron Length:

560

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGT|GTATGTTAG

5'SS Class:

weak_major

3'SS Sequence:

TTAATTTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TTATTATTAATT

Flanking Amino Acid:

VEESQKTDPGKRLHTESEVC

Intron Amino Acid Position:

451

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.9

0.37

1.1

60.5

40.8

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

85.5

0.8

80.1

37.1

Minor 5ss

47.6

-0.2

2.5

58.1

46.5

Minor BPS

71.1

0.74

1.5

85.74

Associated Gene:

Gene:

CLCC1

Ensembl Gene ID:

ENSAPLG00000013572

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014133

5696538 - 5708958

12421

ENSAPLT00000046512

5696538 - 5708958

12421