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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5702061_5703149_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5702061 - 5703149
Intron Length:
1089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGATGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTGCTTTGATG
Flanking Amino Acid:
EKLNWKDSLFEWLRSKWTLQ
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.7
0.38
1.1
61.3
43.5
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
59.5
0.15
1.5
61.34
41.8

Associated Gene:

Gene:
CLCC1
Ensembl Gene ID:
ENSAPLG00000013572
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046512
5696538 - 5708958
12421
ENSAPLT00000014133
5696538 - 5708958
12421