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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5703835_5704954_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5703835 - 5704954
Intron Length:
1120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TCTTTCCTATCT
Flanking Amino Acid:
FGIDLYNMFVMLLCLVCIVI
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.1
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
90.3
0.91
0.6
88.5
21.1
Minor 5ss
29.9
-2.3
3.3
35
42.5
Minor BPS
57.9
0.33
2
80
42.1

Associated Gene:

Gene:
CLCC1
Ensembl Gene ID:
ENSAPLG00000013572
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014133
5696538 - 5708958
12421