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Intron Name: Anas_platyrhynchos_platyrhynchos_8_5703976_5704954_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5703976 - 5704954

Intron Length:

979

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

TGTGCTGCAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTAAT

U12 Branch Point Sequence:

TGTGCTGCAACA

Flanking Amino Acid:

FGIDLYNMFVMCYENKKFPN

Intron Amino Acid Position:

194

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

73.1

31.1

Major BPS

76.6

0.66

1.1

75.9

36.3

Major PPT

64.6

0.33

1.1

58.5

Minor 5ss

29.9

-2.3

3.3

42.5

Minor BPS

46.8

-0.2

2.2

63.91

42.7

Associated Gene:

Gene:

CLCC1

Ensembl Gene ID:

ENSAPLG00000013572

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046512

5696538 - 5708958

12421