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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5721296_5721403_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5721296 - 5721403
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGACA
5'SS Class:
strong_major
3'SS Sequence:
TCACCACCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATCACCA
Flanking Amino Acid:
SIQKLGELNIDASQRLTADG
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74
36.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
71.3
0.48
0.9
66.8
34.2
Minor 5ss
38.6
-1.3
3
49.3
46.7
Minor BPS
48.8
-0
2.1
70
41.8

Associated Gene:

Gene:
WDR47
Ensembl Gene ID:
ENSAPLG00000013416
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043601
5713959 - 5734546
20588