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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5724263_5725851_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5724263 - 5725851
Intron Length:
1589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTGCGACAAGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTCTTCTCCATG
Flanking Amino Acid:
CHSIFEESPERDTPVEPQHP
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
75.4
34.5
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
48.8
-0
1.2
47.5
38.9
Minor 5ss
33.5
-1.9
3.1
42.4
44.3
Minor BPS
48
-0.3
2
58.48
44.1

Associated Gene:

Gene:
WDR47
Ensembl Gene ID:
ENSAPLG00000013416
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043601
5713959 - 5734546
20588
ENSAPLT00000013988
5713959 - 5734534
20576