Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5747010_5748028_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5747010 - 5748028

Intron Length:

1019

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACCGAT

5'SS Class:

major

3'SS Sequence:

CGTGTTTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ACAGCTTTATCG

Flanking Amino Acid:

SPKTPVKGPPVSSLSLASLN

Intron Amino Acid Position:

1285

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.63

1.2

72.3

39.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

83.1

0.75

0.9

80.3

37.3

Minor 5ss

43.5

-0.7

3.3

64.1

47.4

Minor BPS

48.4

-0.2

1.8

49.9

44.4

Associated Gene:

Gene:

CAMSAP2

Ensembl Gene ID:

ENSAPLG00000013256

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033899

5742943 - 5819332

76390

ENSAPLT00000013823

5743126 - 5819332

76207