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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5764938_5767951_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5764938 - 5767951
Intron Length:
3014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTCTA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TATATCTAATCT
Flanking Amino Acid:
FYCPDIVKLEDICLKETMSL
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
70.6
41.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
43.4
-0.7
2.8
50
46.3
Minor BPS
50.7
0.1
2
73.4
43.3

Associated Gene:

Gene:
CAMSAP2
Ensembl Gene ID:
ENSAPLG00000013256
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013823
5743126 - 5819332
76207
ENSAPLT00000033899
5742943 - 5819332
76390