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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5768094_5777834_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5768094 - 5777834
Intron Length:
9741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTATATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TCTCTCTTAATC
Flanking Amino Acid:
HSAESAGGQKARYRKEQTLL
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
78.9
0.65
0.8
74.3
34.8
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
73.2
0.71
1.2
75.09
35.7

Associated Gene:

Gene:
CAMSAP2
Ensembl Gene ID:
ENSAPLG00000013256
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033899
5742943 - 5819332
76390