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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5772326_5777834_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5772326 - 5777834
Intron Length:
5509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCTCTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTTCCTACTG
Flanking Amino Acid:
HSAESAGGQKSPTKWFWKLV
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
68.2
0.41
1
68
32.5
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
52.9
-0
2
67.26
41

Associated Gene:

Gene:
CAMSAP2
Ensembl Gene ID:
ENSAPLG00000013256
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013823
5743126 - 5819332
76207