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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5820055_5824931_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5820055 - 5824931
Intron Length:
4877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTGTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTCCAGCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
73.8
42.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82
0.72
0.9
73.1
41.5
Minor 5ss
37.2
-1.5
3.6
57.4
46.8
Minor BPS
51.8
0.14
2.2
81.93
39.6

Associated Gene:

Gene:
DDX59
Ensembl Gene ID:
ENSAPLG00000012921
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029224
5819929 - 5847843
27915