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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5841559_5842109_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5841559 - 5842109
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
QLHRLKQSVKVIIATPGRLL
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.9
36.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
32.9
-2
3.2
43.7
43.7
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
DDX59
Ensembl Gene ID:
ENSAPLG00000012921
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040808
5819733 - 5847843
28111
ENSAPLT00000029224
5819929 - 5847843
27915
ENSAPLT00000013453
5827163 - 5847017
19855
ENSAPLT00000046356
5835075 - 5847017
11943
ENSAPLT00000040859
5819733 - 5847843
28111