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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5842200_5842603_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5842200 - 5842603
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTAACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTGTTTTTAACT
Flanking Amino Acid:
HGIKIVVVDEVDTMLKMGFQ
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.2
0.59
0.9
74.8
39
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
76.3
0.9
1.1
83.91
37.2

Associated Gene:

Gene:
DDX59
Ensembl Gene ID:
ENSAPLG00000012921
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040859
5819733 - 5847843
28111
ENSAPLT00000029224
5819929 - 5847843
27915
ENSAPLT00000013453
5827163 - 5847017
19855
ENSAPLT00000046356
5835075 - 5847017
11943