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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5842200_5843711_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5842200 - 5843711
Intron Length:
1512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCTTCTATAAAC
Flanking Amino Acid:
HGIKIVVVDEDKKLFKPPVL
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
92
0.95
0.7
84.8
35.4
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
61.1
0.33
1.7
72.43
38.5

Associated Gene:

Gene:
DDX59
Ensembl Gene ID:
ENSAPLG00000012921
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040808
5819733 - 5847843
28111