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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5842856_5843711_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5842856 - 5843711
Intron Length:
856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCTTCTATAAAC
Flanking Amino Acid:
KKKKLFEILNDKKLFKPPVL
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
84.1
30.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
92
0.95
0.7
84.8
35.4
Minor 5ss
45.2
-0.5
2.8
57.4
40.7
Minor BPS
61.1
0.33
1.7
72.43
38.5

Associated Gene:

Gene:
DDX59
Ensembl Gene ID:
ENSAPLG00000012921
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046356
5835075 - 5847017
11943
ENSAPLT00000040859
5819733 - 5847843
28111
ENSAPLT00000029224
5819929 - 5847843
27915
ENSAPLT00000013453
5827163 - 5847017
19855