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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5844962_5846672_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5844962 - 5846672
Intron Length:
1711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATAACTTAAACT
Flanking Amino Acid:
PSSMDEYVHQVGRAGRLGHS
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
60.4
0.4
1.7
75.97
40.5

Associated Gene:

Gene:
DDX59
Ensembl Gene ID:
ENSAPLG00000012921
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040808
5819733 - 5847843
28111
ENSAPLT00000029224
5819929 - 5847843
27915
ENSAPLT00000013453
5827163 - 5847017
19855
ENSAPLT00000046356
5835075 - 5847017
11943
ENSAPLT00000040859
5819733 - 5847843
28111