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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5894011_5894766_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5894011 - 5894766
Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGTAGT
5'SS Class:
major
3'SS Sequence:
TTCTTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GATATCACAAAT
Flanking Amino Acid:
LSGVLIADDHCVIKNNLGQV
Intron Amino Acid Position:
840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.7
41.5
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
36.5
-1.5
3
48.4
42.4
Minor BPS
44.6
-0.3
1.9
61.73
41

Associated Gene:

Gene:
KIF14
Ensembl Gene ID:
ENSAPLG00000009855
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036953
5884279 - 5908659
24381
ENSAPLT00000028113
5884279 - 5908659
24381
ENSAPLT00000010271
5884279 - 5908659
24381