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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5895242_5896088_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5895242 - 5896088
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGCATT
5'SS Class:
major
3'SS Sequence:
TTTCCATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATGTTTCCATTT
Flanking Amino Acid:
KNELLIAQKTQLESEIEEAR
Intron Amino Acid Position:
928

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
75.9
39.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.5
0.73
0.7
77.9
29.6
Minor 5ss
47.5
-0.2
2.9
72.4
38
Minor BPS
41.8
-0.5
1.9
58.35
39.5

Associated Gene:

Gene:
KIF14
Ensembl Gene ID:
ENSAPLG00000009855
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036953
5884279 - 5908659
24381
ENSAPLT00000028113
5884279 - 5908659
24381
ENSAPLT00000010271
5884279 - 5908659
24381