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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5896237_5896965_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5896237 - 5896965
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTATATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTGTCCTTTATT
Flanking Amino Acid:
SKIKSLEAEVREESRKKQMQ
Intron Amino Acid Position:
978

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.5
0.57
0.9
75.9
37.8
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
67.8
0.64
1.6
79.54
43

Associated Gene:

Gene:
KIF14
Ensembl Gene ID:
ENSAPLG00000009855
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036953
5884279 - 5908659
24381
ENSAPLT00000028113
5884279 - 5908659
24381
ENSAPLT00000010271
5884279 - 5908659
24381