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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5898521_5899280_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5898521 - 5899280
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTCAAATTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTAAACT
Flanking Amino Acid:
NELGKNTVFCRHDKVDDKTG
Intron Amino Acid Position:
1102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.4
20.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65.3
0.35
0.9
62
38.5
Minor 5ss
34.8
-1.7
2.8
44.9
43.2
Minor BPS
73.6
0.82
1.6
90.89
33.1

Associated Gene:

Gene:
KIF14
Ensembl Gene ID:
ENSAPLG00000009855
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036953
5884279 - 5908659
24381
ENSAPLT00000028113
5884279 - 5908659
24381
ENSAPLT00000010271
5884279 - 5908659
24381