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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5900020_5900699_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5900020 - 5900699
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATAATT
5'SS Class:
strong_major
3'SS Sequence:
TCATCCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGTCTTTTATG
Flanking Amino Acid:
DASVSSLSRRRSRSLMKNKR
Intron Amino Acid Position:
1182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
82.5
29.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
77.4
0.62
0.8
69.7
36.4
Minor 5ss
34
-1.8
3.1
49.1
46.7
Minor BPS
61.5
0.22
1.7
66.64
41.8

Associated Gene:

Gene:
KIF14
Ensembl Gene ID:
ENSAPLG00000009855
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028113
5884279 - 5908659
24381
ENSAPLT00000010271
5884279 - 5908659
24381
ENSAPLT00000036953
5884279 - 5908659
24381