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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5900795_5901518_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5900795 - 5901518
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCACCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
AGTTTCTTGACA
Flanking Amino Acid:
THDTQTSYISGSQSKSSICP
Intron Amino Acid Position:
1214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.7
0.76
0.8
76.9
31.5
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
74.6
0.77
1.1
77.11
32.9

Associated Gene:

Gene:
KIF14
Ensembl Gene ID:
ENSAPLG00000009855
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036953
5884279 - 5908659
24381
ENSAPLT00000028113
5884279 - 5908659
24381
ENSAPLT00000010271
5884279 - 5908659
24381