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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5906308_5906441_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5906308 - 5906441
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTACC
5'SS Class:
major
3'SS Sequence:
TTGTTTCTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAATTCTTACTG
Flanking Amino Acid:
VYQIVSSTLQGSFRNTSPLR
Intron Amino Acid Position:
1514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
73.4
35.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.6
0.69
0.8
76.8
32
Minor 5ss
43.2
-0.8
2.4
55.7
41.5
Minor BPS
57.6
0.1
1.7
60.77
41.5

Associated Gene:

Gene:
KIF14
Ensembl Gene ID:
ENSAPLG00000009855
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036953
5884279 - 5908659
24381
ENSAPLT00000028113
5884279 - 5908659
24381
ENSAPLT00000010271
5884279 - 5908659
24381