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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5906821_5907886_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5906821 - 5907886
Intron Length:
1066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGGGTATA
5'SS Class:
major
3'SS Sequence:
GTTTATTTCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
FPEELSLGKIHF*
Intron Amino Acid Position:
1640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.1
68.2
38.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
70.3
0.46
1.1
70.7
38.8
Minor 5ss
34.7
-1.7
3.1
46.9
42.8
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
KIF14
Ensembl Gene ID:
ENSAPLG00000009855
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010271
5884279 - 5908659
24381