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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5944735_5946738_F

Intron Information:

Intron Rank:
145216
Intron Class:
major
Intron Phase:
Intron Coordinates:
5944735 - 5946738
Intron Length:
2004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGACCA
5'SS Class:
major
3'SS Sequence:
CTTCCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATTTCCCAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
67.3
37.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
84.9
0.79
0.7
76.5
32
Minor 5ss
34.7
-1.7
3.1
45.5
42.2
Minor BPS
45.8
-0.4
2.1
57.29
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028304
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027762
5938981 - 5947792
8812