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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5946838_5947722_F

Intron Information:

Intron Rank:
145217
Intron Class:
major
Intron Phase:
Intron Coordinates:
5946838 - 5947722
Intron Length:
885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTAATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTTTTCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
75.1
36
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.7
0.62
0.9
79.6
32.7
Minor 5ss
40.6
-1
2.8
53.5
43.5
Minor BPS
64.8
0.54
1.6
82.33
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028304
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027762
5938981 - 5947792
8812