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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5948017_5948537_F

Intron Information:

Intron Rank:
149247
Intron Class:
major
Intron Phase:
Intron Coordinates:
5948017 - 5948537
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCATCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TCATCTTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
81.8
0.72
0.8
75.5
32.9
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
51.6
-0
1.8
56.97
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030259
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038655
5947813 - 5949013
1201