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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5971736_5972161_F

Intron Information:

Intron Rank:
146597
Intron Class:
major
Intron Phase:
Intron Coordinates:
5971736 - 5972161
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGATTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TCTGTATTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
85.6
0.8
0.8
80.8
36.6
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
52.1
0.15
1.7
70.98
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028983
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018947
5971295 - 5972811
1517