Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5976391_5981305_F

Intron Information:

Intron Rank:

142189

Intron Class:

major

Intron Phase:

Intron Coordinates:

5976391 - 5981305

Intron Length:

4915

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTCAGTATC

5'SS Class:

major

3'SS Sequence:

TCTGTTTTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTAAA

U12 Branch Point Sequence:

TTTTTTTTTTCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.9

0.56

1.3

76.2

39.9

Major BPS

67.6

0.44

1.2

69.9

35.3

Major PPT

85.1

0.79

0.8

83.9

31.1

Minor 5ss

35.3

-1.7

2.7

38.5

39.3

Minor BPS

45.5

-0.2

3.6

82.93

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026571

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048154

5976310 - 5982994

6685