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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5981432_5982534_F

Intron Information:

Intron Rank:
142190
Intron Class:
major
Intron Phase:
Intron Coordinates:
5981432 - 5982534
Intron Length:
1103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTCT
5'SS Class:
major
3'SS Sequence:
TCTCTTACCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
ATTCTCTTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
72.5
39.7
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
77.6
0.62
0.8
70
35.2
Minor 5ss
47.3
-0.3
2.8
68.6
42
Minor BPS
64.3
0.43
1.6
73.85
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026571
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048154
5976310 - 5982994
6685