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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5981432_6008191_F

Intron Information:

Intron Rank:
142182
Intron Class:
major
Intron Phase:
Intron Coordinates:
5981432 - 6008191
Intron Length:
26760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTCT
5'SS Class:
major
3'SS Sequence:
GTTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATAAAATTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
72.5
39.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
87.4
0.84
0.8
84.8
35.4
Minor 5ss
47.3
-0.3
2.8
68.6
42
Minor BPS
49.4
-0
1.8
61.27
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026571
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020785
5980831 - 6008308
27478