Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6016768_6025053_F

Intron Information:

Intron Rank:

142183

Intron Class:

major

Intron Phase:

Intron Coordinates:

6016768 - 6025053

Intron Length:

8286

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

CTTCTGTTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTCAC

U12 Branch Point Sequence:

TCTCACAAAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

89.1

24.2

Major BPS

67.3

0.43

1.2

71.3

36.7

Major PPT

80.1

0.68

0.8

72.1

37.9

Minor 5ss

39.8

-1.1

2.9

41.5

Minor BPS

44.6

-0.4

57.64

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026571

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029023

6016717 - 6026039

9323