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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6032906_6055869_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6032906 - 6055869
Intron Length:
22964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTATCATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTTTTCTACTT
Flanking Amino Acid:
CLKFLVLFSLDVKNLENFQL
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
74.1
0.54
1
70.8
39.3
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
54.5
0.22
1.9
79.49
37.4

Associated Gene:

Gene:
NR5A2
Ensembl Gene ID:
ENSAPLG00000009302
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046231
6032658 - 6119317
86660
ENSAPLT00000026670
6032658 - 6110833
78176
ENSAPLT00000009714
6032658 - 6119317
86660