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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6056018_6068314_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6056018 - 6068314
Intron Length:
12297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTCTCTTTTACA
Flanking Amino Acid:
GSILLVTGQQVDYSVIASQA
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.8
86
23.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
91.6
0.94
0.6
87
23.6
Minor 5ss
35.6
-1.6
2.8
42.6
38.4
Minor BPS
70.7
0.65
1.6
78.99
37.5

Associated Gene:

Gene:
NR5A2
Ensembl Gene ID:
ENSAPLG00000009302
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046231
6032658 - 6119317
86660
ENSAPLT00000026670
6032658 - 6110833
78176
ENSAPLT00000009714
6032658 - 6119317
86660