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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6068435_6103156_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6068435 - 6103156
Intron Length:
34722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGTTCAT
U12 Branch Point Sequence:
GTTTGCTTTACA
Flanking Amino Acid:
RSSIFFRELKVDDQMKLLQN
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
81.4
32.7
Major BPS
72.4
0.56
1.2
75
39.9
Major PPT
83.3
0.75
0.9
76.3
37.8
Minor 5ss
34.6
-1.7
3
44.4
43.7
Minor BPS
61.2
0.35
2.1
76.35
40.5

Associated Gene:

Gene:
NR5A2
Ensembl Gene ID:
ENSAPLG00000009302
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009714
6032658 - 6119317
86660
ENSAPLT00000046231
6032658 - 6119317
86660
ENSAPLT00000026670
6032658 - 6110833
78176