About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6103804_6106480_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6103804 - 6106480
Intron Length:
2677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TCTCCCCTGACA
Flanking Amino Acid:
KCLSVGMKLEAVRADRMRGG
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
75.3
40.8
Major BPS
84.6
0.86
1
74
41.2
Major PPT
73
0.52
0.9
68.5
31.9
Minor 5ss
40.5
-1.1
3.1
57.5
46.7
Minor BPS
62
0.37
1.7
73.14
38.3

Associated Gene:

Gene:
NR5A2
Ensembl Gene ID:
ENSAPLG00000009302
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046231
6032658 - 6119317
86660
ENSAPLT00000026670
6032658 - 6110833
78176
ENSAPLT00000009714
6032658 - 6119317
86660