Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_6172431_6173409_F

Intron Information:

Intron Rank:

125195

Intron Class:

major

Intron Phase:

Intron Coordinates:

6172431 - 6173409

Intron Length:

979

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTATG

5'SS Class:

major

3'SS Sequence:

GTCTGCTCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

GGCCTCTCACTC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.66

75.9

39.9

Major BPS

72.7

0.56

30.1

Major PPT

72.8

0.51

0.9

69.3

36.9

Minor 5ss

41.5

-0.9

2.8

57.1

41.1

Minor BPS

42.8

-0.5

1.7

44.98

37.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017415

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028482

6172409 - 6179513

7105